updated 5.7 years ago by
James W. MacDonald
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written 5.7 years ago by
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updated 6.6 years ago by
James W. MacDonald
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written 6.6 years ago by
tanyabioinfo
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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
by
ATpoint
★
4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do:
```r
seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
Guido Hooiveld
★
4.0k
After checking `?DESeqDataSetFromMatrix` note this information:
arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function
by
Guido Hooiveld
★
4.0k
Yes, you are missing something. :-)
For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function
by
Robert Castelo
★
3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0
by
sgomez
•
0
Hi Max,
Could you try this?
https://support.bioconductor.org/p/9136138/#9136840
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